Introduction | The melanoma subset | Fitting with a condition | The responder block in the decomposition | Which pairs carry the condition difference | The genes that carry it | Session info

Installation | Introduction | Overview of the PACE workflow | The breast cancer dataset | Fitting the model | The pipeline step by step | Variance decomposition | Per-cell contamination | Pairwise spatial interactions | Macrophage–tumour drivers | Visualising the proximity effect | Biological interpretation | Keeping results with the data | Saving a fit | Session info

Installation | Introduction | Disclaimer | Getting Started | FuseSOM Matrix Input | Using FuseSOM to estimate the number of clusters | FuseSOM Sinlge Cell Epxeriment object as input. | Using FuseSOM to estimate the number of clusters for single cell experiment objects | FuseSOM Spatial Epxeriment object as input. | sessionInfo()